species:   Pimic
pid:       PID1829
parent:    Pmic_miR-6
paralog:   
locus:     scaffold_134:66475-66733
matures:   ['AACGGAUAGAUCAAUAUUAAGACC', 'CCUUAAUUUUGAUCUAUCCGUUGU']
srr:       SRX5082453
genome:    /Users/jax/+Genomes/Fungal_genomes/Pimic.Pismi1_AssemblyScaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Wong-Bajracharya2022-kz.SRX5082453.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Wong-Bajracharya2022-kz.SRX5082453.cram scaffold_134:66475-66733

0 out of bounds
101 alignments
85 proper strand
79 stranded perfect matches

                                                                                                                    **************************                                                                          **************************                 
CUCAUGAAAAGUGCUCGAGUUUACAGGACACAAGGGUUCUGUAUGCGCGAUCGAUAUAUCGAGCGGCUGUACUAGGAAUACCUCUGUGGAUGACAACUCUGGCACUACCUGGUAUCACAACGGAUAGAUCAAUAUUAAGACCAGGCCUAAACGUUGUUGUGUGUCAAUACUUCAAAUAUAGUCUAUUGUAUUCACAUUUUGACACUGUUUUGGCCUGGCCUUAAUUUUGAUCUAUCCGUUGUGUAUGGGAGGGGAGGAA
(((......((((((.(((((..((...((((((((((((((((((.((.((((....)))).)))).))))..))))).))).))))..))..))))).)))))).(((..((((((((((((((((((((.((((((.(((((((.(((((.(((((.((((.(((((.................))))).))))..))))).))))).))))))).)))))).))))))))))))))))).)))...))))))...
----------------------------------------------------------------------------------------------------------------------AACGGAUAGAUCAAUAUUAAGACC--------------------------------------------------------------------------------------------------------------------- l=24 a=47 c
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCUUAAUUUUGAUCUAUCCGUUGU----------------- l=24 a=1 c*
----------------------------------------------------------------------------------------------------------------------AACGGAUAGAUCAAUAUUAAGACC--------------------------------------------------------------------------------------------------------------------- l=24 a=47 ma
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCUUAAUUUUGAUCUAUCCGUUGU----------------- l=24 a=1 ma*

-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UAAUUUUGAUCUAUCCGUUGU----------------- l=21 a=1 
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCUUAAUUUUGAUCUAUCCGUUGU----------------- l=24 a=1 (c*,ma*)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUGGCCUGGCCUUAAUUUUGAUC--------------------------- l=23 a=4 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUGGCCUGGCCUUAAUUUUGAUCU-------------------------- l=24 a=3 
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUUGGCCUGGCCUUAAUUUUGAUC--------------------------- l=24 a=1 
--------------------------------------------------------------------------------------------------------------------------------------UUAAGACCAGGCCUAAACG---------------------------------------------------------------------------------------------------------- l=19 a=1 
----------------------------------------------------------------------------------------------------------------------------------AAUAUUAAGACCAGGCCUAAAC----------------------------------------------------------------------------------------------------------- l=22 a=2 
----------------------------------------------------------------------------------------------------------------------------------AAUAUUAAGACCAGGCCUAAACG---------------------------------------------------------------------------------------------------------- l=23 a=3 
-------------------------------------------------------------------------------------------------------------------------------AUCAAUAUUAAGACCAGGCCU--------------------------------------------------------------------------------------------------------------- l=21 a=1 
----------------------------------------------------------------------------------------------------------------------AACGGAUAGAUCAAUAUUAAG------------------------------------------------------------------------------------------------------------------------ l=21 a=1 
----------------------------------------------------------------------------------------------------------------------AACGGAUAGAUaAAUAUUAAGA----------------------------------------------------------------------------------------------------------------------- l=22 a=1 
----------------------------------------------------------------------------------------------------------------------AACGGAUAGAUCAAUAUUAAGA----------------------------------------------------------------------------------------------------------------------- l=22 a=1 
----------------------------------------------------------------------------------------------------------------------AACGGAUAGAUCAAUAUUAAGAC---------------------------------------------------------------------------------------------------------------------- l=23 a=13 
----------------------------------------------------------------------------------------------------------------------AACGGAUAGAUCAAUAUUAAGACC--------------------------------------------------------------------------------------------------------------------- l=24 a=47 (c,ma)
----------------------------------------------------------------------------------------------------------------------AACGGAUAGAUCAAUAUUAAGACu--------------------------------------------------------------------------------------------------------------------- l=24 a=1 
----------------------------------------------------------------------------------------------------------------------AACGGAUAGcUCAAUAUUAAGACC--------------------------------------------------------------------------------------------------------------------- l=24 a=2 
----------------------------------------------------------------------------------------------------------------------AACGGAUAGAUCAAUAUUAAGACa--------------------------------------------------------------------------------------------------------------------- l=24 a=1 
----------------------------------------------------------------------------------------------------------------------AACGGAUAGAUaAAUAUUAAGACC--------------------------------------------------------------------------------------------------------------------- l=24 a=1 

mb-01111
ax-1111011
ku-01
ss-111111111111
fn-111
